PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10260_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 250aa    MW: 28112 Da    PI: 8.0824
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10260_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof105.43.2e-332177561
       zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                  + cprC s+ntkfCyynnys+sqPry C++Crr+Wt+GGalr+vP+Gg +rk k++
  RrC10260_p2 21 PRVCPRCSSDNTKFCYYNNYSVSQPRYNCRNCRRFWTHGGALRDVPIGGRARKIKRT 77
                 678**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-211676IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.7292276IPR003851Zinc finger, Dof-type
PfamPF027011.9E-302276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010154Biological Processfruit development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDKLNVTVIE NHQVNEEKPP PRVCPRCSSD NTKFCYYNNY SVSQPRYNCR NCRRFWTHGG  60
ALRDVPIGGR ARKIKRTRID QPSVSQVVSV IQQVNNHQPF SHAQETNEFL GTFGGSSSSS  120
AVVGNDFSSL PETHGDMVLP IRSIPPTDRF DLFDGPFNQG YYGVGCNDLV GNPLMKHSIG  180
GHVDNYNSYR VNQEDPNNQN QSFNDSMNMN HNASSSGNRG HPGTDHMIIN NKDINKCVFR  240
SSYHLEKYGP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469706.11e-176PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA93e-73DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A078JWI51e-152A0A078JWI5_BRANA; BnaUnng03510D protein
TrEMBLA0A0D3A4Q51e-152A0A0D3A4Q5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EV001e-152A0A3P6EV00_BRAOL; Uncharacterized protein
STRINGBo1g023740.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-63Dof-type zinc finger domain-containing protein