PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1026_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 178aa    MW: 20040.5 Da    PI: 8.0074
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1026_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.27.2e-3396154159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r a+dp+vv++tYeg Hnh+
  RrC1026_p2  96 LDDGYRWRKYGQKSVKNNGHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHP 154
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-3383155IPR003657WRKY domain
SuperFamilySSF1182905.75E-2988155IPR003657WRKY domain
PROSITE profilePS5081129.21891156IPR003657WRKY domain
SMARTSM007744.4E-3896155IPR003657WRKY domain
PfamPF031063.5E-2697154IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MLTLEEGENN HFCSFDDKQL MMMVPSLMFS GDMGTSSSCS PASFHMSAQP ENFQGGGGGE  60
AMEMGGLNDH NNKGKGKRSS ALQRIAFHTR SDDDVLDDGY RWRKYGQKSV KNNGHPRSYY  120
RCTYHTCNVK KQVQRLAKDP NVVVTTYEGV HNHPSEKVME TLSPLLRQLQ FLTRVSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2686153774Probable WRKY transcription factor 4
2lex_A3e-2686153774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300630.0KF430063.1 Brassica rapa WRKY transcription factor 56 (WRKY56) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455366.11e-131PREDICTED: probable WRKY transcription factor 56
SwissprotQ8VWQ41e-96WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A0D3E4E91e-115A0A0D3E4E9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E4Z41e-115A0A3P6E4Z4_BRAOL; Uncharacterized protein
STRINGBo9g033920.11e-116(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.17e-99WRKY DNA-binding protein 56