PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1029_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 288aa    MW: 32937.4 Da    PI: 6.8363
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1029_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.41.3e-3242152199
                 EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 f+k ltpsdv+k++rlv+pk++ae++            ++++ +++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L+ gD+v F+++++
  RrC1029_p2  42 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnttisnadtSSSSDKGMLLSFEDESGKWWRFRYSYWNSSQSYVLTKGWSRYVKDKQLEPGDVVFFQRQRS 140
                 99*************************999999998885556699**************************************************9988 PP

                 SEE..EEEEE-S CS
          B3  88 sefelvvkvfrk 99 
                 + ++l+++++r+
  RrC1029_p2 141 DHRRLFIGWRRR 152
                 9999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-4036159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-3137152IPR015300DNA-binding pseudobarrel domain
CDDcd100177.01E-2741141No hitNo description
PfamPF023624.3E-3042152IPR003340B3 DNA binding domain
PROSITE profilePS5086313.64842153IPR003340B3 DNA binding domain
SMARTSM010191.0E-2342153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSVNQYSMDH HHQHTLFWQH LHTTDASEPT TWLSEDQKES LFEKSLTPSD VGKLNRLVIP  60
KQHAEKYFPL NTTISNADTS SSSDKGMLLS FEDESGKWWR FRYSYWNSSQ SYVLTKGWSR  120
YVKDKQLEPG DVVFFQRQRS DHRRLFIGWR RRGQGSSSAV NTTSYSSSMA APPYLQINAS  180
SNMAPHSGYS HYGVAVTTAT ETHSIPSSSA VGSSRTVRLF GVNLECQMDE EDGDDSVATA  240
AAAECPYHDS YYDQNMYNYY TQPHNMVSLL FYFILSIFCF KLGTLHHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-48381524113B3 domain-containing transcription factor NGA1
5os9_B7e-48381524113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475101.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X1
SwissprotQ9FNI31e-122Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A3P6AJN61e-148A0A3P6AJN6_BRAOL; Uncharacterized protein
STRINGBo3g003800.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-118B3 family protein