PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10331_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 271aa    MW: 31839.3 Da    PI: 10.4881
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10331_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-2862112151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                  k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+lye+ss
  RrC10331_p1  62 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQNGRLYEFSS 112
                  68***********************************************96 PP
2K-box58.23.4e-201422241597
        K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  e+l++e++ + k+i+ L+ +qR+l+G++L+s+s+ eLq++  q+eksl+ +Rs+K el+ +q+ +l+++e+el +e ++L++k
  RrC10331_p1 142 EELKKEMDIMVKKIDLLEVQQRKLMGQGLGSCSVAELQEIDIQIEKSLRIVRSRKAELYADQLGKLKEQERELMNERRRLHEK 224
                  7899****************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.52554114IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-4054113IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-295676IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-3256131IPR002100Transcription factor, MADS-box
CDDcd002651.33E-4156127No hitNo description
PfamPF003192.4E-2663110IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-297691IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-2991112IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.102141232IPR002487Transcription factor, K-box
PfamPF014863.0E-19142224IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MRFKQQWNKI KYGNKLLPMT TLKKILDKGI RNKLSLWRLK AVMGMDGTLQ FWKMVRGKIE  60
IKKIENVTSR QVTFSKRRSG LFKKAHELSV LCDAQVAAIV FSQNGRLYEF SSSEMEKTIE  120
RYGKFSNEYF VPRRPQLQLY LEELKKEMDI MVKKIDLLEV QQRKLMGQGL GSCSVAELQE  180
IDIQIEKSLR IVRSRKAELY ADQLGKLKEQ ERELMNERRR LHEKEIRERL LRPLLPVTLH  240
TEKGEPEGGY RTKHSSEVET DLFIGLPVAR P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-1854126173MEF2 CHIMERA
6byy_B5e-1854126173MEF2 CHIMERA
6byy_C5e-1854126173MEF2 CHIMERA
6byy_D5e-1854126173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454345.11e-156PREDICTED: MADS-box protein AGL71
RefseqXP_018454346.11e-156PREDICTED: MADS-box protein AGL71
RefseqXP_018454347.11e-156PREDICTED: MADS-box protein AGL71
SwissprotQ9LT931e-113AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A397XIY71e-138A0A397XIY7_BRACM; Uncharacterized protein
STRINGBra028283.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.31e-110AGAMOUS-like 71