PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10376_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 349aa    MW: 38271.2 Da    PI: 10.222
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10376_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-31280338259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  RrC10376_p3 280 SDEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERAPDDAMMLIVTYEGDHNHA 338
                  69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-15243277IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.5E-33267339IPR003657WRKY domain
PROSITE profilePS5081129.895274340IPR003657WRKY domain
SuperFamilySSF1182909.55E-26277338IPR003657WRKY domain
SMARTSM007741.2E-37279339IPR003657WRKY domain
PfamPF031061.7E-26281337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MTVELIMSSS SYGAGRVKRE EDGGCFSAGK EDTALKEAAS EGIHGVQEFL KLIGQSQQTE  60
EKQTEITAVT DVAVNSFKKV ISLLGRSTTG HARFRRGPVT TPKKEDGGAV KTEEEKPRTT  120
TTTTVVLNRE KTEKYGGSAF RVYCPTPIHR RPPLSHNHTQ TKNGSSSSAP LLPNGRPHQE  180
PPSSTIHFAP SPPVSATNSF MSSHRCETES NQMSSGFEFT NPSSQFSGSR GKPPLSSASL  240
KRKCSSTPSG RCHCTKKRKS KVKRVIRVPA VSSKMADIPS DEFSWRKYGQ KPIKGSPHPR  300
GYYKCSSMRG CPARKHVERA PDDAMMLIVT YEGDHNHAMV LETHHDKTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22267339273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240258KRKCSSTPSGRCHCTKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300300.0KF430030.1 Brassica rapa WRKY transcription factor 7 (WRKY7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485299.10.0PREDICTED: probable WRKY transcription factor 7
RefseqXP_018485306.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-175WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A078FCC40.0A0A078FCC4_BRANA; BnaA03g46550D protein
STRINGBra019239.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-161WRKY DNA-binding protein 7