PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10414_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 581aa    MW: 65362 Da    PI: 4.7859
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10414_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.93.6e-48131472128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                  +pGfrFhPtdeelvv+yLk+k+ g+kl++ +vi  vd+ykv+P +Lpk           +k+++++w++F++r++ky++  r++r t++gyWkatgkd
  RrC10414_p1  13 APGFRFHPTDEELVVYYLKRKICGRKLRI-NVIGVVDVYKVDPTELPKlnnlceaglsVLKSGDRQWFYFTPRNRKYPNAARSSRGTATGYWKATGKD 109
                  69***************************.99***************778999999987788999********************************* PP

          NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  + ++  +++ vglkktLvfy+grap+ge+tdWvmhey++
  RrC10414_p1 110 RIIVY-NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 147
                  ****9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-5312170IPR003441NAC domain
PROSITE profilePS5100551.87912170IPR003441NAC domain
PfamPF023653.5E-2514146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MANSCLKGGR FSAPGFRFHP TDEELVVYYL KRKICGRKLR INVIGVVDVY KVDPTELPKL  60
NNLCEAGLSV LKSGDRQWFY FTPRNRKYPN AARSSRGTAT GYWKATGKDR IIVYNSRSVG  120
LKKTLVFYRG RAPNGERTDW VMHEYTMDEE ELGRCKNAKE YYALYKLYKK SGAGPKNGEE  180
YGAPFQEEEW VDGDDDDGEE ADDVAVPDDH VVRYENNPRV DNGLFCNPVN VRADDFNKLL  240
NEIPYAPGLA PRQMNEVSGV MQVNSQEEMQ STLLNNSTGE FLAPWEVGMF LPNCQPNSIH  300
SSYQSHVRSA DSFDCSEVKS AFKTSGVAPF VFEKEDYIEM DDLLTPEQVA VSVEKPGQFL  360
NPGEEYEHFN DYDQLFHDVS MSFDLEPVFQ ETYADLSSVS NFANDGRQPF LYQQQFQDQT  420
LETQANSFMD PNPNANQLVD DVWFKDAQAA LYDQPQSSSL AFASPSSGLM PESKNQECQN  480
GGETRSQFSS AMWALLDSVP STPASACEGP LNRTFVRMSS LSRIRFNGTS VTTSKVTVAK  540
KSFGNKGFLL LSVMGAMCAF FWVFIIAIVG VQGRHRYLNM S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-431414717140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00178DAPTransfer from AT1G34180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487250.10.0PREDICTED: NAC domain-containing protein 16-like
SwissprotA4FVP60.0NAC16_ARATH; NAC domain-containing protein 16
TrEMBLA0A0D3CGH30.0A0A0D3CGH3_BRAOL; Uncharacterized protein
STRINGBo5g085440.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.10.0NAC domain containing protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]