PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10478_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 246aa    MW: 26874.5 Da    PI: 7.6245
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10478_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.29.6e-322103197
       DUF260   1 aCaaCkvlrrkCakdCvlapyf....pa.eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+l+p++    pa +q +++ +v+k+FG++ ++++++++pe++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q+++e
  RrC10478_p1   2 SCNGCRVLRKGCSESCILRPCIqwiePAeAQGHATVFVAKFFGRAGLMSFISSVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQAAVE 99 
                  6************************9762558****************************************************************99 PP

       DUF260  94 lall 97 
                  ++l+
  RrC10478_p1 100 TVLR 103
                  9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.3071107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCIQWIEPAE AQGHATVFVA KFFGRAGLMS FISSVPESQR  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLRPI PELLTRDGGF  120
GGFPSPTSDE ASEICTEMLN DSGDGNIYHH CRFSSSRSRP TVTPPKRKRL GTEQHQQQQR  180
PCSELDLSLL SIFPIKTRQL KEETARPETP SMYSGESVTT TPFTDNIAGE GFARGGETTK  240
LLNLFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436786.10.0PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN231e-127LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A3P5YEH01e-153A0A3P5YEH0_BRACM; Uncharacterized protein
STRINGBra036040.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-122LOB domain-containing protein 38