PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10501_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 202aa    MW: 22619.2 Da    PI: 9.4184
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10501_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-2058107356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+++AeIrdp+   k +r++lg+f taeeAa a+++a+ +++g+
  RrC10501_p3  58 YRGVRQRP-WGKYAAEIRDPN---KGARVWLGTFNTAEEAALAYDKAAFEFRGH 107
                  9*******.**********93...25*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-3357115IPR001471AP2/ERF domain
PROSITE profilePS5103223.81557114IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-2357115IPR016177DNA-binding domain
SMARTSM003808.7E-3957120IPR001471AP2/ERF domain
CDDcd000182.57E-3457116No hitNo description
PRINTSPR003672.5E-115869IPR001471AP2/ERF domain
PfamPF008473.4E-1458107IPR001471AP2/ERF domain
PRINTSPR003672.5E-118096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAQKREEKED LCRCSTLSES DVSAFVSELT DKPIPPSMAS SSSSLTPQEQ RVSRQGNYRG  60
VRQRPWGKYA AEIRDPNKGA RVWLGTFNTA EEAALAYDKA AFEFRGHKAK LNFPEHIVIN  120
STTHHRYLST ATSHDPIIVT PVPTVAPDIL LDQYGKFLPA NSDSNRDNLS ITTSSSLSQQ  180
GNRPRLEESD NLKNMSINKR RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2757117566ATERF1
3gcc_A4e-2757117566ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892921e-146AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485116.11e-114PREDICTED: ethylene-responsive transcription factor ERF112-like isoform X1
SwissprotP930074e-79EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A3P6C8011e-110A0A3P6C801_BRACM; Uncharacterized protein
STRINGBo4g182140.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.15e-65ERF family protein