PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC10531_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CAMTA

Protein Properties

Length: 877aa MW: 97829.1 Da PI: 5.4716

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10531_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.4	1.8e-55	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e ++rwl++ ei++iL+n++k+++++e++++p sgs+ L++rk++r+frkDG++w+kk+dgktv+E+he+LK g+vevl+cyYah+++n++fqrr+y RrC10531_p1 20 SEaRNRWLRPPEICEILQNYQKFQISTEPPSTPASGSVYLFDRKVLRFFRKDGHNWRKKRDGKTVKEAHERLKAGSVEVLHCYYAHGHDNENFQRRSY 117 4449******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylevk 118 w+L+eel++iv+vhylevk RrC10531_p1 118 WMLQEELSHIVFVHYLEVK 136 **************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.494	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.6E-80	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	9.4E-49	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	8.2E-4	432	519	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	4.4E-4	433	518	IPR002909	IPT domain
SuperFamily	SSF81296	5.42E-16	433	518	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.52E-14	626	730	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.353	626	727	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.24E-10	629	727	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.2E-14	629	731	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.137	668	700	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	9.029	827	855	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MEEARRFSPN NELDVGQILS EARNRWLRPP EICEILQNYQ KFQISTEPPS TPASGSVYLF 60 DRKVLRFFRK DGHNWRKKRD GKTVKEAHER LKAGSVEVLH CYYAHGHDNE NFQRRSYWML 120 QEELSHIVFV HYLEVKGSRV STSYNRMQRT PDSAHFSHEN GEVFTCERDG YASGIINQYD 180 HSNHSQATDS ASVNGVHTPE FEDVESAYNQ QGNSIVYSHQ KPASTGFDPY YQMSLTPRDS 240 YQTELSRVPI ITDSSRTING PGATNGLRNK KSIDSQTWEE ILGNCGSGAE EGLPLQPNSE 300 NDEVLDQIIE GSSFTMRDFA SLQESMLKSQ DQELNGLASS EKAPYLSTMK QHLLDGALGE 360 EGLKKVDSFS RWMSKELGEL GGDVGVIADA NESFTHFSST PYWEEVNNGH KSRRDLDGYV 420 MSPSLSREQL FSIIDFAPNW TYVGCEVNVL VTGKFLKTRE EAETGEWSCM FGQTEVPADV 480 IADGILQCVA PMHEAGRVPF YVTCSNRLAC SEVREFEYKV LESQAFGRET DESTACNNSI 540 ESLEARFVKL LCSKSDDYSR SSNNAGDLSQ VSEKISLLLF ENDDQLDQML MDEISQENMK 600 NNLLQEALKE SLHSWLLQKI AAEGGGKGPN VLDEGGQGVL HFAAALGYNW ALEPTIVAGV 660 SVDFRDVNGW TALHWAAFFG RELVIGSLIA LGASPGTLTD PNPDFPSGST PSDLAYANGY 720 KGIAGYLSEY ALRAHVSLLS LNESNAAAES TPSPSSSSLT DSLTAVRNAT QAAARIHQVF 780 RAQSFQKKQL KEFGDRKFGM SEERALSMLA PKTTHKPGRA HSDDSVQAAA IRIQNKFRGY 840 KGRKDYLITR QRIIKIQVRF SSLMILISFI VVTLKRL

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MEEARRFSPN NELDVGQILS EARNRWLRPP EICEILQNYQ KFQISTEPPS TPASGSVYLF  60
DRKVLRFFRK DGHNWRKKRD GKTVKEAHER LKAGSVEVLH CYYAHGHDNE NFQRRSYWML  120
QEELSHIVFV HYLEVKGSRV STSYNRMQRT PDSAHFSHEN GEVFTCERDG YASGIINQYD  180
HSNHSQATDS ASVNGVHTPE FEDVESAYNQ QGNSIVYSHQ KPASTGFDPY YQMSLTPRDS  240
YQTELSRVPI ITDSSRTING PGATNGLRNK KSIDSQTWEE ILGNCGSGAE EGLPLQPNSE  300
NDEVLDQIIE GSSFTMRDFA SLQESMLKSQ DQELNGLASS EKAPYLSTMK QHLLDGALGE  360
EGLKKVDSFS RWMSKELGEL GGDVGVIADA NESFTHFSST PYWEEVNNGH KSRRDLDGYV  420
MSPSLSREQL FSIIDFAPNW TYVGCEVNVL VTGKFLKTRE EAETGEWSCM FGQTEVPADV  480
IADGILQCVA PMHEAGRVPF YVTCSNRLAC SEVREFEYKV LESQAFGRET DESTACNNSI  540
ESLEARFVKL LCSKSDDYSR SSNNAGDLSQ VSEKISLLLF ENDDQLDQML MDEISQENMK  600
NNLLQEALKE SLHSWLLQKI AAEGGGKGPN VLDEGGQGVL HFAAALGYNW ALEPTIVAGV  660
SVDFRDVNGW TALHWAAFFG RELVIGSLIA LGASPGTLTD PNPDFPSGST PSDLAYANGY  720
KGIAGYLSEY ALRAHVSLLS LNESNAAAES TPSPSSSSLT DSLTAVRNAT QAAARIHQVF  780
RAQSFQKKQL KEFGDRKFGM SEERALSMLA PKTTHKPGRA HSDDSVQAAA IRIQNKFRGY  840
KGRKDYLITR QRIIKIQVRF SSLMILISFI VVTLKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014331.1	0.0	calmodulin-binding transcription activator 3 isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	V4LQS4	0.0	V4LQS4_EUTSA; Uncharacterized protein
STRING	XP_006404687.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8601	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]