PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1054_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 306aa MW: 33916.1 Da PI: 9.4153

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1054_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.5	3.8e-34	59	200	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.......sgyWk 84 lp+G++F+Ptd+e++ e+L+ kv+++ ++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + +W+ RrC1054_p2 59 LPAGVKFDPTDQEVL-EHLEGKVRDDArklhplIDEFIrTIEGEnGICYTHPEKLP-GVSKDGTVRHFFHRPSKAYTTGTRKRRKVHtdsevggETRWH 155 799********99.99**9996666553332224666657******.666777899**************7443455555778 PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tgk+++vl+ +g++ g kk+Lv+y g+++k+ekt+Wvmh+y+l RrC1054_p2 156 KTGKTRPVLT-GGRVRGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200 ********.9*********6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.55E-38	53	219	IPR003441	NAC domain
PROSITE profile	PS51005	33.514	59	219	IPR003441	NAC domain
Pfam	PF02365	2.7E-15	60	200	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MTWCNDRSDV QTVERIIPSP TAADSPAASF PVSCHKTCPS CGHKFKFHEQ AGIHDLPGLP 60 AGVKFDPTDQ EVLEHLEGKV RDDARKLHPL IDEFIRTIEG ENGICYTHPE KLPGVSKDGT 120 VRHFFHRPSK AYTTGTRKRR KVHTDSEVGG ETRWHKTGKT RPVLTGGRVR GYKKILVLYT 180 NYGKQKKPEK TNWVMHQYHL GTNEEEKEGE LVVSKVFYQT QPRQCGGSVA AAAATAKERP 240 YLHGHGHQLG GGGGRHLHYH LHNVKGNGGG GSDGASEYYN NIPAIISFNQ TGIQNHLVHG 300 SQPFLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056658	0.0	DQ056658.1 Arabidopsis thaliana no apical meristem family protein (At4g28500) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013696599.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	0.0	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A078HCI7	0.0	A0A078HCI7_BRANA; BnaA01g08370D protein
TrEMBL	A0A398AJV5	0.0	A0A398AJV5_BRACM; Uncharacterized protein
STRING	Bra011034.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-176	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]