PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC10606_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 232aa MW: 26449.8 Da PI: 9.2841

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10606_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.1	4.2e-34	85	142	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ RrC10606_p1 85 EDGYRWRKYGQKAVKNSSYPRSYYRCTTQKCNVKKRVERSFQDPSMVITTYEGKHNHP 142 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-35	69	144	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-30	76	144	IPR003657	WRKY domain
PROSITE profile	PS50811	32.099	79	144	IPR003657	WRKY domain
SMART	SM00774	8.6E-40	84	143	IPR003657	WRKY domain
Pfam	PF03106	1.2E-26	85	142	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MGQIVNYPYL NLNPNSPIVS SSSIEADPKE SLGDKSGSME DNEGDQHGVG ESSKQLTKQG 60 KEKGEKKERE ARVAFMTKSE IDHLEDGYRW RKYGQKAVKN SSYPRSYYRC TTQKCNVKKR 120 VERSFQDPSM VITTYEGKHN HPIPSTLRGP VVSEHLLGHR GSCLFHSFPR QHQEFLVMNQ 180 PPVNYQSVGS KSYECTHRSN SNHQEIKSQP FVVVHVEKQT LLNVLTIRLL LC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-29	74	145	7	78	Probable WRKY transcription factor 4
2lex_A	2e-29	74	145	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00168	DAP	Transfer from AT1G29860	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430077	1e-170	KF430077.1 Brassica rapa WRKY transcription factor 71 (WRKY71) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018463617.1	1e-139	PREDICTED: probable WRKY transcription factor 71
Swissprot	Q93WV4	2e-96	WRK71_ARATH; WRKY transcription factor 71
TrEMBL	A0A078GIK7	1e-109	A0A078GIK7_BRANA; BnaA09g26610D protein
TrEMBL	A0A397Y5L2	1e-109	A0A397Y5L2_BRACM; Uncharacterized protein
TrEMBL	A0A3P5Y2B5	1e-109	A0A3P5Y2B5_BRACM; Uncharacterized protein
TrEMBL	M4EU58	1e-109	M4EU58_BRARP; Uncharacterized protein
STRING	Bra032340.1-P	1e-109	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13911	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	7e-93	WRKY DNA-binding protein 71

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu Y, et al. WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana. Plant J., 2016. 85(1): p. 96-106 [PMID:26643131] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Yu Y, et al. WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(2): p. 414-422 [PMID:29272465]