PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10672_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family YABBY
Protein Properties Length: 159aa    MW: 17429.8 Da    PI: 9.1181
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10672_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY77.34.8e-24561460
        YABBY  4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaae 60
                  +++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+  
  RrC10672_p1  5 ATAAEQLCYIPCNFCNIVLAVSVPGSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRP 61
                 5689*******************************************9999887755 PP
2YABBY102.77.4e-3283143100160
        YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                    s+ + + ++++  v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aakn 
  RrC10672_p1  83 ISSRISARTISEQRVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNV 143
                  235556778888888*********************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.4E-597143IPR006780YABBY protein
SuperFamilySSF470953.4E-697139IPR009071High mobility group box domain
CDDcd000843.65E-4107134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSNSATAAEQ LCYIPCNFCN IVLAVSVPGS SLFDIVTVRC GHCTNLWSVN MAAALQSLSR  60
PNFQATPYAT PEYGSSSRGH TKISSRISAR TISEQRVVNR PPEKRQRVPS AYNQFIKEEI  120
QRIKANNPDI SHREAFSTAA KNVCMIISAG ALKYNGTEC
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532911e-151AK353291.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-G08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466116.11e-101PREDICTED: axial regulator YABBY 5
RefseqXP_018466117.11e-101PREDICTED: axial regulator YABBY 5
RefseqXP_018466118.11e-101PREDICTED: axial regulator YABBY 5
SwissprotQ8GW462e-92YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A3N6R3993e-97A0A3N6R399_BRACR; Uncharacterized protein
STRINGBo3g041840.12e-97(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55382649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.28e-95YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]