PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC10743_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 340aa MW: 38329.7 Da PI: 4.5505

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10743_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.9	3.6e-48	13	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +pGfrFhPtdeelv++yLk+k+ ++kl++ ++i vd+yk++P++Lp + +k+++++w++F++r++ky++ r+ r t++g Wkatgkd+ + ++ RrC10743_p1 13 APGFRFHPTDEELVMYYLKRKICKRKLRV-NAIGVVDVYKLDPEELPgQsVLKTGDRQWFYFTPRSRKYPNAARSGRCTTTGHWKATGKDRVISY-NS 108 69*************************.89**********96347788999********************************99.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vglkktLvfy+grap+g++tdWvmhey++ RrC10743_p1 109 RSVGLKKTLVFYRGRAPNGQRTDWVMHEYTM 139 9**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	51.267	12	162	IPR003441	NAC domain
SuperFamily	SSF101941	2.88E-54	13	162	IPR003441	NAC domain
Pfam	PF02365	8.2E-25	14	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MADSCLKGGK FSAPGFRFHP TDEELVMYYL KRKICKRKLR VNAIGVVDVY KLDPEELPGQ 60 SVLKTGDRQW FYFTPRSRKY PNAARSGRCT TTGHWKATGK DRVISYNSRS VGLKKTLVFY 120 RGRAPNGQRT DWVMHEYTMD EDELGRCKNA KEYYALYKLF KKSGAGPKNG EEYGAPFQEE 180 EWADDDNGDD IAVPEEPVVR CVDNVSLVNV QLDDLEEILS GIPFAPGVPQ TCTNIPQVNR 240 DEDLQSTLVN NSAREFLKPQ GTGDVFFSND MPSSYESIDF TSAPNNSPLV FEKEDYIEMD 300 DLLTPDLGAS SSLVDNPAQL LNPGEYGDFN DFDQLFHDVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-43	14	139	17	140	Stress-induced transcription factor NAC1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	38	RKICKRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269\|PubMed:24045017}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold and drought stresses. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232513	1e-105	AC232513.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065E07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447064.1	0.0	PREDICTED: NAC domain-containing protein 17-like
Swissprot	Q9XIC5	1e-179	NAC17_ARATH; NAC domain-containing protein 17
TrEMBL	A0A397YIM5	0.0	A0A397YIM5_BRACM; Uncharacterized protein
STRING	Bra036744.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2812	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	0.0	NAC domain containing protein 17

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Van Aken O,Ford E,Lister R,Huang S,Millar AH Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance. Plant J., 2016. 88(4): p. 542-558 [PMID:27425258] Hu Z, et al. Mitochondrial Defects Confer Tolerance against Cellulose Deficiency. Plant Cell, 2016. 28(9): p. 2276-2290 [PMID:27543091] Chi YH, et al. The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis. Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647 [PMID:28088515] Van Aken O,Pogson BJ Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death. Cell Death Differ., 2017. 24(6): p. 955-960 [PMID:28498364] Cheng P, et al. The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis. Front Plant Sci, 2018. 9: p. 182 [PMID:29497438]