PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1074_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 527aa    MW: 61358.4 Da    PI: 6.4646
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1074_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.17.2e-36161452128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkg 97 
                 ppG+rF Ptd el+ +yLk+  ++++ ++ ++ i++++iy+++P++L +++k+ + +ew+f s+r k +++g++++r   + gyW+a+  +k++++kk+
  RrC1074_p2  16 PPGYRFVPTDAELIYYYLKPFSQDNNKSCPNFpIHHANIYESNPQQLTEEYKKgNLTEWFFISERTKIKRNGTKQKRgDHNGGYWHAKAATKKIKAKKQ 114
                 9*************************9988888**************9655551556********************9899****************** PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   vg k+tL +y g++p+g++t+W+m+ey l
  RrC1074_p2 115 GIVGYKTTLNYYVGKQPNGVRTNWLMKEYWL 145
                 *****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-4210164IPR003441NAC domain
PROSITE profilePS5100540.35615164IPR003441NAC domain
PfamPF023651.5E-1916144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MQPSSSSSAS SSLAYPPGYR FVPTDAELIY YYLKPFSQDN NKSCPNFPIH HANIYESNPQ  60
QLTEEYKKGN LTEWFFISER TKIKRNGTKQ KRGDHNGGYW HAKAATKKIK AKKQGIVGYK  120
TTLNYYVGKQ PNGVRTNWLM KEYWLESSDH NNTVDYAICK IYLKPTAKKD MEEEDVEDLE  180
EEFVQPSNVE NQQPQPQFRQ PELDSHQPQR HDIAYQEPLQ PQPLNTIYHH QSHNTESEFE  240
ELHQPQPLNT IHHHQPQRHG SAYQELPQPH PLDTIHHHQP QRHGIAYQEP HQPQPLVTTD  300
HHQSQRHGIA YQEPHQPQPL VTTDHHQPQL HNIAYQEPNQ SQSLDIIVQH QSHQVQYWQA  360
TLGSDQKQPH DRVQDQLQQF LPAPLDSHAP HRHDIQYRQP QPLDAIEYQY LYQSGPLTTY  420
GNMIESSTLD KSNGDIKKVD HDALKSHLTP RGIKREAEEE EDEKRKRKKK EGGVEASKEE  480
LEQPINSHQN SDEDDSFYTG FVDTHLLDID IESSIDRCRL KKSSDKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-191116413165NO APICAL MERISTEM PROTEIN
1ut4_B5e-191116413165NO APICAL MERISTEM PROTEIN
1ut7_A5e-191116413165NO APICAL MERISTEM PROTEIN
1ut7_B5e-191116413165NO APICAL MERISTEM PROTEIN
4dul_A5e-191116413165NAC domain-containing protein 19
4dul_B5e-191116413165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1463469KRKRKKK
2464468RKRKK
3464470RKRKKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460408.10.0PREDICTED: NAC transcription factor 29-like
TrEMBLA0A397ZI180.0A0A397ZI18_BRACM; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.16e-58NAC domain containing protein 64