PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10825_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 326aa    MW: 36227.6 Da    PI: 5.1697
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10825_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-32190245156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++WtpeLH+rFv+a++qLGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+
  RrC10825_p1 190 KQRRCWTPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 245
                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.164187247IPR017930Myb domain
SuperFamilySSF466896.09E-18188248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-28189248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-26190245IPR006447Myb domain, plants
PfamPF002493.0E-9192243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGSLWDELSL GSRRPTSIPT TIYGFPTKAS VEKLEEEKMK IQGSDLDLPL CLQILNDAIS  60
YLKEESKRCS EMDTQPLLKD FISGDSPLLK REKKLELWRE DDHIPNGSFS DTNNKLDIER  120
NEEKPYGLSI LLNPGMKTPE VETGLGLGLG LGLASCSMVN GGRSKGIGFT SNVSVPQPPP  180
YLQQQALLRK QRRCWTPELH RRFVDALQQL GGPGVATPKQ IREHMQEEGL TNDEVKSHLQ  240
KYRLHIRKSN SNPEKQSVVV LGFNLWNSSS QDEEEGGESS KRSNSQSDSP QGPLHLPCTT  300
TTTTGGDSSM EDTEDAKSES FQIGRD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453875.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9FX841e-118HHO6_ARATH; Transcription factor HHO6
TrEMBLA0A0D3CPI01e-170A0A0D3CPI0_BRAOL; Uncharacterized protein
STRINGBo6g018370.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139271824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.12e-93G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]