PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1082_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 252aa    MW: 28867.7 Da    PI: 6.4236
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1082_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.22.8e-082012342154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  RrC1082_p4 201 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 234
                 579*****************************87 PP
2ELK27.66.9e-10155176122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++++++++++++E++
  RrC1082_p4 155 ELKHELKQGFKEKIVDIREEIM 176
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.9E-6134IPR005540KNOX1
PfamPF037901.7E-10233IPR005540KNOX1
SMARTSM012562.4E-254196IPR005541KNOX2
PfamPF037918.7E-194695IPR005541KNOX2
PROSITE profilePS512139.446155175IPR005539ELK domain
SMARTSM011886.2E-4155176IPR005539ELK domain
PfamPF037891.7E-6155176IPR005539ELK domain
PROSITE profilePS5007112.034175238IPR001356Homeobox domain
SMARTSM003891.2E-10177242IPR001356Homeobox domain
SuperFamilySSF466891.8E-16177242IPR009057Homeodomain-like
CDDcd000868.57E-12178234No hitNo description
Gene3DG3DSA:1.10.10.602.0E-25182240IPR009057Homeodomain-like
PfamPF059208.2E-18195234IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MFEQLLAAHV ACLRVATPVD QIPRIDAQLG ELHTIAAKYS TLGVDVDNKE LDHFMSHYVV  60
LLCSFKEQLQ HHVCVHAMEA ITACWEIEQS LQSVTGVSPS ESNGKTMSDD EDDNQVESEV  120
NMFDGSLDGS DCMMGFGPLV PTERERSLLE RVKKELKHEL KQGFKEKIVD IREEIMRKRR  180
AGKLPGDTTS ILKEWWQTHA KWPYPTEEDK AKLVQETGLQ LKQINNWFIN QRKRNWNNNS  240
STSSTLSKNK RK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525800.0AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467864.10.0PREDICTED: homeobox protein knotted-1-like 5
SwissprotP480021e-176KNAT5_ARATH; Homeobox protein knotted-1-like 5
TrEMBLA0A0D3A2Q01e-174A0A0D3A2Q0_BRAOL; Uncharacterized protein
TrEMBLU6JT451e-174U6JT45_BRAOL; Uncharacterized protein
STRINGBo1g010750.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.11e-169KNOTTED1-like homeobox gene 5