PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC10831_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 198aa MW: 23168.2 Da PI: 7.462

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10831_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.8	3.3e-27	28	116	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y++++GF +r+ + ++s+r+g+i r+f C+keg+ + + k+ + r++r++tr gCka+++vk +++gkw+vtk+++eHnH+l+ RrC10831_p2 28 FYDDYSRSLGFVMRVMSCRRSERDGRILARRFGCNKEGRCVSVRGKSGSVRKPRQSTREGCKAMIHVKYDRSGKWVVTKFVKEHNHPLV 116 9************************************99999999**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-25	28	116	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MAVEDDDSTI EEPREGTEFE SEEAAKTFYD DYSRSLGFVM RVMSCRRSER DGRILARRFG 60 CNKEGRCVSV RGKSGSVRKP RQSTREGCKA MIHVKYDRSG KWVVTKFVKE HNHPLVVEPR 120 QARQSLDEKD KRIHELTVEL RNEKRLCAAY KEQLDAFAKI VEEYSNRMSK KVESVVENLK 180 EFERIEVELL HSNEDDIF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480754.1	1e-141	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	3e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	M4F9G0	1e-123	M4F9G0_BRARP; Uncharacterized protein
STRING	Bra037723.1-P	1e-124	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-115	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]