PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC10958_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 449aa MW: 49063.4 Da PI: 6.3072

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10958_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	258	305	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq RrC10958_p1 258 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 305 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-17	252	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.82E-10	252	309	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.4E-17	254	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	254	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-6	258	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	260	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MDNELFMNVS EMTSLSSSSP AMLNWASSME THPLEQSVIT RNVPRDCFFW EKSTEQSVIG 60 SAPTSHVSPP SVSNFSGGGG GAGENHVIRE LIGNLGNIGD IYGAPASIIG NSSGSLYAAP 120 TMSSSPPLDA FSGDSRFAER AARFSCFNGR GTTNGPVAET ASINGELTRV SSTSALKPPT 180 GESSGESSRK RKGKSKENSH SSTVTPSHNL PKEVEEKEDS DSKRSRKSKE NGGEDTKSID 240 PYKDFIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY 300 VQSLQRQVEF LSMKLSSVNT RLDFNMDALM SKDIFPSSNN QQVLQLESSS DILLADHHSH 360 TLQLNPNDPS INIMNPMETS ESRSFNSQLP TLTHFTDSIS QFSTFSEDDL HSIIHMGFAQ 420 NHIRELNPVH STSFQGPSNQ VPSHMKAEL

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MDNELFMNVS EMTSLSSSSP AMLNWASSME THPLEQSVIT RNVPRDCFFW EKSTEQSVIG  60
SAPTSHVSPP SVSNFSGGGG GAGENHVIRE LIGNLGNIGD IYGAPASIIG NSSGSLYAAP  120
TMSSSPPLDA FSGDSRFAER AARFSCFNGR GTTNGPVAET ASINGELTRV SSTSALKPPT  180
GESSGESSRK RKGKSKENSH SSTVTPSHNL PKEVEEKEDS DSKRSRKSKE NGGEDTKSID  240
PYKDFIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY  300
VQSLQRQVEF LSMKLSSVNT RLDFNMDALM SKDIFPSSNN QQVLQLESSS DILLADHHSH  360
TLQLNPNDPS INIMNPMETS ESRSFNSQLP TLTHFTDSIS QFSTFSEDDL HSIIHMGFAQ  420
NHIRELNPVH STSFQGPSNQ VPSHMKAEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488595	0.0	AF488595.1 Arabidopsis thaliana clone bHLH062 putative bHLH transcription factor mRNA, complete cds.
GenBank	AK175369	0.0	AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17.
GenBank	AK175496	0.0	AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09.
GenBank	BT026497	0.0	BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018485436.1	0.0	PREDICTED: transcription factor bHLH62
Swissprot	Q9SRT2	0.0	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A078GRM2	0.0	A0A078GRM2_BRANA; BnaC05g44630D protein
STRING	Bo5g141620.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-167	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]