PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10959_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 342aa    MW: 38002.5 Da    PI: 6.2855
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10959_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.23.8e-54201461128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdee++++yLk+kv + +++   +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdke+l+ kg 
  RrC10959_p1  20 LPPGFRFHPTDEEIITHYLKEKVFNIRFTS-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEILRGKGC 116
                  79*************************998.78***************8888899***************************************9*** PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  lvg+kktLvfy+grapkgekt+Wvmheyrl
  RrC10959_p1 117 LVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 146
                  ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-6117172IPR003441NAC domain
PROSITE profilePS5100557.94620171IPR003441NAC domain
PfamPF023658.4E-2921146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVDEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTSA AIGQADLNKN  60
EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY WKATGKDKEI LRGKGCLVGM  120
KKTLVFYRGR APKGEKTNWV MHEYRLDGIY SYHNLPKSAR DEWVVCRVFH KNAPPPTTIA  180
TPTNQLTRID SLDNIDHLLD FSSLPPLIDP GFLSQPGPSF SGAGQQHDFK PIPHHPTTVQ  240
INNTYPSAQT LNYPYHSVPT YGFGSGSGTS LGNNNNGMIK LEHSLVSVSQ DTGLSSDVNT  300
TATPEISSSY PVMGNIAANA AMVDGNNTSY DDDDLGIFWD DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-501817315167NO APICAL MERISTEM PROTEIN
1ut4_B2e-501817315167NO APICAL MERISTEM PROTEIN
1ut7_A2e-501817315167NO APICAL MERISTEM PROTEIN
1ut7_B2e-501817315167NO APICAL MERISTEM PROTEIN
3swm_A2e-501817318170NAC domain-containing protein 19
3swm_B2e-501817318170NAC domain-containing protein 19
3swm_C2e-501817318170NAC domain-containing protein 19
3swm_D2e-501817318170NAC domain-containing protein 19
3swp_A2e-501817318170NAC domain-containing protein 19
3swp_B2e-501817318170NAC domain-containing protein 19
3swp_C2e-501817318170NAC domain-containing protein 19
3swp_D2e-501817318170NAC domain-containing protein 19
4dul_A2e-501817315167NAC domain-containing protein 19
4dul_B2e-501817315167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438968.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9SQQ60.0NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A3P5ZRA00.0A0A3P5ZRA0_BRACM; Uncharacterized protein
STRINGBo1g152230.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.10.0NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]