PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10982_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 172aa    MW: 19033.2 Da    PI: 5.783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10982_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-151401355
          AP2 13 grWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  RrC10982_p1  1 GKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 40
                 8********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.558148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-24149IPR001471AP2/ERF domain
PfamPF008473.5E-9140IPR001471AP2/ERF domain
CDDcd000184.20E-24150No hitNo description
SMARTSM003801.3E-23154IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18149IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
GKWVAEIRLP RNRTRLWLGT FDTAEEAALA YDKAAYKLRG DFARLNFPNL RHSGSHIGGE  60
FGEYKPLHST VDAKLEAICQ SMAEAEKQGK TAATKGSKKR ASKKTETEKV KAEDNSSAGS  120
PPPATEFVES AGSSPLSDLT FADTEEPPQC WNETFSLEKY PSYEIDWDKI LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-141541569ATERF1
3gcc_A3e-141541569ATERF1
5wx9_A8e-141572481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894141e-170AC189414.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061K11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456738.11e-123PREDICTED: ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E43e-94RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A397YSV21e-103A0A397YSV2_BRACM; Uncharacterized protein
TrEMBLA0A3N6RVR51e-103A0A3N6RVR5_BRACR; Uncharacterized protein
TrEMBLA0A3P6G1W21e-103A0A3P6G1W2_BRAOL; Uncharacterized protein
TrEMBLM4DGK91e-103M4DGK9_BRARP; Uncharacterized protein
STRINGBra015634.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-83related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]