PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10994_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 223aa    MW: 24668.6 Da    PI: 6.9455
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10994_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.82e-2085119135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  RrC10994_p1  85 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 119
                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-1979131IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.91679115IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-1382120No hitNo description
Gene3DG3DSA:3.30.50.104.5E-1783119IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.16E-1484116No hitNo description
PfamPF003204.8E-1885119IPR000679Zinc finger, GATA-type
PROSITE patternPS00344085110IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MMGFSMFFSS ENEVVHHSSP YASVDCTLSL GTPSTRLCNE SNDEDDRRFS SHTSNNMSNS  60
LGSWDFLHGG KKGGGGGNNL LARRCANCDT TSTPLWRNGP RGPKSLCNAC GIRFKKEERR  120
ASTARNATSG GGSTAASVPA TDHYGGANYY YNNNNNSHYD SSSPWIHHQH QNTHRVPYYS  180
PANNEYSFAD DVRDDNHDVT TDPFLSWRLN VADRASLVHD FTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16876GGKKGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480826.11e-139PREDICTED: GATA transcription factor 19-like
SwissprotQ6QPM21e-101GAT19_ARATH; GATA transcription factor 19
TrEMBLV4LS541e-117V4LS54_EUTSA; Uncharacterized protein
STRINGXP_006411982.11e-118(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-100GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]