PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1102_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 258aa MW: 28842.1 Da PI: 5.001

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1102_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.5e-31	64	122	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eH h+ RrC1102_p2 64 SDSWSWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERSRDDPTMIIITYTSEHSHP 122 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-32	56	124	IPR003657	WRKY domain
PROSITE profile	PS50811	31.915	58	124	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-27	59	124	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	63	123	IPR003657	WRKY domain
Pfam	PF03106	9.9E-27	65	122	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MKRGYNDQES SQETGPESPN SPTFNAGVSS HSPKRRRSME KKVVNVPMKE IEGSRHKGDT 60 TPPSDSWSWR KYGQKPIKGS PYPRGYYRCS STKGCPARKQ VERSRDDPTM IIITYTSEHS 120 HPWPLASSSS RNGPKPKPEP KPEPELEVPE EVVELEEDAN SNSKLMVMGR EIETTPSCII 180 DEFAWFSEME TTSSTILESP IFSSEKKTAV STTGDDVAVF FPMGEDDESL FADLGELPEC 240 SLVFRHRSSV VGSQVEIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-21	41	124	6	79	Disease resistance protein RRS1
5w3x_D	3e-21	41	124	6	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430071	0.0	KF430071.1 Brassica rapa WRKY transcription factor 65 (WRKY65) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449409.1	1e-163	PREDICTED: probable WRKY transcription factor 65
Swissprot	Q9LP56	1e-138	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A3P6C6J8	1e-156	A0A3P6C6J8_BRACM; Uncharacterized protein
STRING	Bo5g058590.1	1e-149	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5383	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-140	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]