PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11089_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 241aa    MW: 28214 Da    PI: 6.6995
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11089_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.3e-35141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d++++ li+w    nsfvv d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll++i 
   RrC11089_p3  14 FVAKTYQMVNDPSTDWLITWGPAHNSFVVADPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQTHLLKNIG 101
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   RrC11089_p3 102 RRKH 105
                   *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-37498IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5610103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.25E-3311103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEDKNNNTNV IAPFVAKTYQ MVNDPSTDWL ITWGPAHNSF VVADPLDFSQ RILPAYFKHN  60
NFSSFVRQLN TYGFRKVDPD RWEFANEHFL RGQTHLLKNI GRRKHARGMM YGQEVEDNGE  120
VVKEIERLKD EQRELELEIQ RMNQRIEATE KRPEQMMAFL YKVVDDPDLL PRMMLEKERT  180
KQVSDKKKRR VTVKSEDQEE ENGRVFGVVS PSPSPPENSM GWVVPMRFGS YNETGLVVNS  240
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-261110317120Heat shock factor protein 1
5hdg_A8e-26111037110Heat shock factor protein 1
5hdn_A8e-26111037110Heat shock factor protein 1
5hdn_B8e-26111037110Heat shock factor protein 1
5hdn_C8e-26111037110Heat shock factor protein 1
5hdn_D8e-26111037110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185189KKKRR
2185190KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490603.11e-168PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV521e-122HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A397YIC51e-148A0A397YIC5_BRACM; Uncharacterized protein
STRINGBo7g033000.11e-144(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-125heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]