PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11096_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 115aa    MW: 12757 Da    PI: 5.7086
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11096_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.71.3e-3138115288
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                   Fl+k+y++++d+  +elisw+e+g+sf+v++  efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++
   RrC11096_p1  38 FLTKTYQLVDDPVHDELISWNEDGSSFIVWKAAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRR 115
                   9****************************************************************999.........9999999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3532115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-4234115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.98E-3135115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.3E-2838115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-213861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-2189101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MPGEQTGEAG GGCSAGNSGG SSGGGGGGEW QRSIPTPFLT KTYQLVDDPV HDELISWNED  60
GSSFIVWKAA EFARDLLPKY FKHNNFSSFV RQLNTYGFRK VVPDRWEFSN DCFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2571151117Heat shock factor protein 1
5d5v_B2e-2571151117Heat shock factor protein 1
5d5v_D2e-2571151117Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325471e-122AC232547.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134244.12e-61PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-54HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLM4C9715e-60M4C971_BRARP; Uncharacterized protein
STRINGBra000749.1-P9e-61(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.18e-56HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]