PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC110_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 288aa    MW: 32964.5 Da    PI: 6.0967
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC110_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.73.8e-16200255257
                XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                ++ +r++r++kNRe+A rsR+RK+a++ eLe+ +++Le eN++L ke+ee + e +
  RrC110_p8 200 AAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLERENEQLLKEIEEKTRERY 255
                5789********************************************98776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-12199264IPR004827Basic-leucine zipper domain
PfamPF001701.2E-14200255IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.208201253IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.75E-10203255No hitNo description
CDDcd147071.32E-16203249No hitNo description
Gene3DG3DSA:1.20.5.1707.0E-13204262No hitNo description
PROSITE patternPS000360206221IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MASFKMMSSS TSRNSDLSRR NSSSASSSSP SVRSNHLRRD PHAADHSRIS FGYGGGGNDA  60
TTTVHDYAFA ASDSMMDVDR RSNGDRNSVN GGGGGRKSVD DVWREIVSGE KKTVMKEEAQ  120
DEYMMTLEDF LAKAAEMDDN DDEIDVKIPP ERLDYGDFDY PMMPQQQQQQ QQQHDQVEMV  180
EISTRRKRGR VVMVEAMDKA AAQRQKRMIK NRESAARSRE RKQAYQVELE TLAAKLEREN  240
EQLLKEIEEK TRERYRSLME QLIPVDDEKR RPSSSLRSSL SRSYSLEW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447244.11e-160PREDICTED: G-box-binding factor 4
SwissprotP427771e-101GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A078FZJ91e-141A0A078FZJ9_BRANA; BnaC05g02200D protein
STRINGBra015281.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.11e-75G-box binding factor 4