PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1110_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 289aa    MW: 31632.1 Da    PI: 6.7406
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1110_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17215250134
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  RrC1110_p4 215 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKG 250
                 *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.13471106IPR010399Tify domain
SMARTSM009791.9E-1171106IPR010399Tify domain
PfamPF062009.4E-1174105IPR010399Tify domain
PfamPF062031.5E-15139181IPR010402CCT domain
PROSITE profilePS5101713.066139181IPR010402CCT domain
PROSITE profilePS501149.222209257IPR000679Zinc finger, GATA-type
SMARTSM004017.1E-11209262IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-13212268No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15214256IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440215242IPR000679Zinc finger, GATA-type
CDDcd002026.58E-15215257No hitNo description
PfamPF003202.1E-15215250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDDDLHGNNG GMHNNGGVQD PSHSMHVQYE HHGMMDEQHA DDVMNEGLVE ADIPSHLGNA  60
SDHRGEVVDR GSENGDQLTL SFQGQVYVFD RVLPEKVQAV LLLLGGREVP QTIPTTVGSP  120
HQNNRGLSGT PQRFSAPQRQ ASLLRFREKR KGRNFDKTIR YTVRKEVALR MQRKKGQFTS  180
AKSSNEDSAS TGSDWGSGQS WALEGSESQK PEALCRHCGT SEKSTPMMRR GPEGPRTLCN  240
ACGLMWANKG ALRDLSKAPP PPTAQNLPAN KIDESILEAE LAGDISNSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458275.10.0PREDICTED: GATA transcription factor 24-like isoform X2
SwissprotQ8GXL71e-161GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A398AXB50.0A0A398AXB5_BRACM; Uncharacterized protein
STRINGBra023900.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-160ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]