PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11134_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 213aa    MW: 24107.9 Da    PI: 8.3114
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11134_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.51e-101451148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++++G g          + R++k+c++rw +yl
      RrC11134_p2 14 KGAWTKEEDQRLIDYIRRHGEG----------LLRCGKSCRLRWINYL 51
                     79******************99..........689***********97 PP
2Myb_DNA-binding27.38.4e-09791022347
                      -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqky 47 
                      +W++Ia +++ gRt++++k++w+++
      RrC11134_p2  79 RWSLIAGRLP-GRTDNEIKNYWNTH 102
                      4*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-16554IPR009057Homeodomain-like
PROSITE profilePS5129415.816955IPR017930Myb domain
SMARTSM007176.8E-71353IPR001005SANT/Myb domain
PfamPF002496.0E-91451IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-2014104IPR009057Homeodomain-like
CDDcd001671.90E-916103No hitNo description
Gene3DG3DSA:1.10.10.608.0E-1855107IPR009057Homeodomain-like
SMARTSM007171.4E-456105IPR001005SANT/Myb domain
PfamPF002491.6E-679102IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR RHGEGLLRCG KSCRLRWINY LRPDLKRGNF  60
SDEEDQSPSV YEILIFFFRW SLIAGRLPGR TDNEIKNYWN THIKRKLLSH GIDPQTHRPV  120
KDNVAVTDAK TASSQLSTTV IVSPQNYAVE YGASTSSTTT DEDLRQNGDS YYRDNSGDME  180
LNLDLTLGSG SGSTSWVGSK PWRDTAMAAR LSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22141077108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467922.11e-133PREDICTED: transcription repressor MYB6-like
SwissprotQ388515e-99MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A3P6A9821e-105A0A3P6A982_BRACM; Uncharacterized protein
STRINGBo3g044210.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-96myb domain protein 6