PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1114_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 255aa MW: 29018.7 Da PI: 8.1224

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1114_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.4	5.1e-31	123	177	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+rW+++LH+rF++a++++GGs++AtPk+i+++m+v+gLt+++vkSHLQkYR++ RrC1114_p2 123 QRRRWSEDLHRRFIDALQRIGGSQVATPKQIRDVMNVDGLTNDEVKSHLQKYRMH 177 8****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-27	119	180	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.687	119	179	IPR017930	Myb domain
SuperFamily	SSF46689	8.33E-17	119	180	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.2E-26	123	177	IPR006447	Myb domain, plants
Pfam	PF00249	8.2E-7	124	175	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MLLLNEAIER LKEEASSSSV MMASKLETDN KKNWMSSAQL WISNTTNSQL PSTNEEEEDR 60 CVSQPPFQTC NKPNQGGAFL SFNRSLPPPP PAPVPLSLMT PTLEILTDYN RTEQSHHIQK 120 KEQRRRWSED LHRRFIDALQ RIGGSQVATP KQIRDVMNVD GLTNDEVKSH LQKYRMHIRK 180 HPLHVAKTLS ASDQRGLLIS LSRSDSPQGP LLVDRCLFSN SAGGHISEEE EKSDGRSSWK 240 SESRWKRQPL LDLEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK316664	2e-71	AK316664.1 Arabidopsis thaliana AT4G37180 mRNA, complete cds, clone: RAFL06-70-N17.
GenBank	ATU62741	2e-71	U62741.1 Arabidopsis thaliana putative cytoskeletal protein mRNA, complete cds.
GenBank	AY039841	2e-71	AY039841.1 Arabidopsis thaliana AT4g37180/C7A10_180 mRNA, partial cds.
GenBank	BT028985	2e-71	BT028985.1 Arabidopsis thaliana At4g37180 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480433.1	1e-151	PREDICTED: myb family transcription factor EFM-like
Swissprot	F4JRB0	1e-100	HHO5_ARATH; Transcription factor HHO5
TrEMBL	V4MKZ9	1e-103	V4MKZ9_EUTSA; Uncharacterized protein
STRING	XP_006411945.1	1e-104	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	5e-91	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]