PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1118_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 427aa    MW: 48039.6 Da    PI: 7.1531
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1118_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-1874124255
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ a eAa+a+++a+ +l+g
  RrC1118_p5  74 HYRGVRRRP-WGKYAAEIRDP---NkKGSRIWLGTYDRAVEAARAYDQAAFQLRG 124
                 7********.**********9...4345*************************98 PP
2AP2491.5e-15322372255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++  + kl+g
  RrC1118_p5 322 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDIDAARAYDYEAFKLRG 372
                 7********.**********954..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-3173132IPR001471AP2/ERF domain
SMARTSM003806.7E-3674138IPR001471AP2/ERF domain
PROSITE profilePS5103224.13174132IPR001471AP2/ERF domain
CDDcd000182.29E-2774132No hitNo description
PfamPF008473.2E-1274124IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2274134IPR016177DNA-binding domain
PRINTSPR003677.7E-137586IPR001471AP2/ERF domain
PRINTSPR003677.7E-13114134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-29321381IPR001471AP2/ERF domain
PROSITE profilePS5103223.96322380IPR001471AP2/ERF domain
SMARTSM003801.0E-33322386IPR001471AP2/ERF domain
CDDcd000185.57E-26322380No hitNo description
SuperFamilySSF541713.4E-21322381IPR016177DNA-binding domain
PfamPF008471.1E-9322372IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
METKPSSYTL HETGPSLYTT QLHDFQFETS PRTINDQTHK PNSTLNRRKP PLPNLSVSRT  60
VSGTVKKTEE EERHYRGVRR RPWGKYAAEI RDPNKKGSRI WLGTYDRAVE AARAYDQAAF  120
QLRGRKAILN FPLDVRATSE SFLEEGVTGK RKRVKSSPAV EEDEKAVAAR VKVEEEESDA  180
TEAEVEAVPL TPSSWMGFWD VGAGDGIFSV PPLSPTSPNF SKHLFEDLMI PDGFMEDFVF  240
DDADFFSGLW SLEPLNQVPK QEPGSPVLDP DSYVQEFLQM EAESSSSTTT TTTTTTTTTT  300
ASTEVETVSN RKRSKRAEET RHYRGVRRRP WGKFAAEIRD PAKKGSRIWL GTFESDIDAA  360
RAYDYEAFKL RGRKAVLNFP LDAGKYDAPV NSCRKRRRTD VPEPQGTTSI PVTMELLCSF  420
MAQRGSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2673381266ATERF1
3gcc_A7e-2673381266ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393397RKRRR
2393398RKRRRT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9918480.0GU991848.1 Brassica napus AP2/ERF transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478171.11e-158PREDICTED: ethylene-responsive transcription factor ERF104
SwissprotQ9FKG13e-98EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLM4D8X81e-133M4D8X8_BRARP; Uncharacterized protein
STRINGBra012938.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.12e-93ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]