PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11235_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 394aa    MW: 43403.6 Da    PI: 7.0825
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11235_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.25.6e-11237296463
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                   kr +r   NR++A rs +RK  +++eLe kv +L+ eN aL   + +l  ++  l++++
  RrC11235_p1 237 PKRVKRILANRLSAARSKERKMLYTAELEHKVHTLQRENAALSAHVTHLHGHSTGLQNQN 296
                  5999******************************************99998887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-14234298IPR004827Basic-leucine zipper domain
PfamPF077161.6E-10236284IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.277236299IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.2E-10238295No hitNo description
SuperFamilySSF579596.88E-11238293No hitNo description
CDDcd147032.09E-20239285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MMMRPNSSSS SSVPNQHLNR VPLPYTGDRV GAPSPIPPAT LPPNHSMPAM EEITVAGFSP  60
YLPPSPFTMY HPTSRMVAGG ENILPPPGKS HMRSNSDDVT FGFSSMMPQP LNSLPPLVPS  120
KPLERSISGG REVSAFRGRT SESEDDIIRA YMEEEMESGR GTTRKKTNGG SGSEGIASPA  180
CGHYRSVSLD SCFLGRPSSD SGEGAYSVEF GNCEFSPDEI ERITADEKLA EIVVAEPKRV  240
KRILANRLSA ARSKERKMLY TAELEHKVHT LQRENAALSA HVTHLHGHST GLQNQNSELR  300
FRLQAMEQQA HLRNALSEKL TEEVQRLRLF IGVPSGSESN ISKTSLNPEM FEQQLRISQL  360
QHQHSNQNNS TMNANPASNG YFSQLSDDPQ FRHI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894802e-47AC189480.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB082F21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436220.10.0PREDICTED: transcription factor VIP1-like
TrEMBLA0A0D3DW911e-126A0A0D3DW91_BRAOL; Uncharacterized protein
STRINGBo8g101920.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2035456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.12e-91bZIP family protein