PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1125_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 243aa    MW: 27545.4 Da    PI: 5.5227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1125_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-2070125155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr++  +g+WvAeIr+p++ +g k+kr +lg+f+ta eAa a+++a+ +++g
  RrC1125_p1  70 CRFRGVRQRV-WGKWVAEIREPVNhRGvKSKRLWLGTFDTAAEAALAYDRAASAMYG 125
                 689*****99.**********999899999**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-2870134No hitNo description
PfamPF008473.4E-1470125IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2071134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-2771134IPR001471AP2/ERF domain
PROSITE profilePS5103221.73371133IPR001471AP2/ERF domain
SMARTSM003805.2E-3171139IPR001471AP2/ERF domain
PRINTSPR003679.1E-107283IPR001471AP2/ERF domain
PRINTSPR003679.1E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEREQNGSNQ IATASIEPSR RRRRVTEPVD TTLSRGVKEE EGLTRVRKVQ AKGSKKGCMR  60
GKGGPDNPVC RFRGVRQRVW GKWVAEIREP VNHRGVKSKR LWLGTFDTAA EAALAYDRAA  120
SAMYGRYARL NFQDGLGNGQ DEEIKKSDEP DSSRSYWLDT YNVSETGNSV IDKKDGEGYL  180
YEDCIELGQD KIENLDRATG NEIVKSEEDC IYDGFELDNG LLYSDSSYHH GGGFDPYLEY  240
FRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1572140670ATERF1
3gcc_A2e-1572140670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00298DAPTransfer from AT2G38340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013748230.11e-142dehydration-responsive element-binding protein 2E-like
SwissprotO809172e-88DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBLA0A078JBN61e-143A0A078JBN6_BRANA; BnaC04g53380D protein
STRINGBo4g027470.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.11e-84ERF family protein
Publications ? help Back to Top
  1. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]