PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11344_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 356aa    MW: 40776.8 Da    PI: 7.8682
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11344_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.72e-52101401128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lppGfrFhPtdeel+ +yL+kkv++++++l ++i++vdiyk++PwdLp+k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + +    
  RrC11344_p1  10 LPPGFRFHPTDEELILHYLRKKVSSSPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPnre 106
                  79****************************.89***************988899**************************************998555 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +e++g+kk Lvfy+g+ pkg+kt+W+mheyrl
  RrC11344_p1 107 gFNENIGIKKALVFYTGKPPKGVKTNWIMHEYRL 140
                  54556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-618186IPR003441NAC domain
PROSITE profilePS5100559.83710186IPR003441NAC domain
PfamPF023654.9E-2811140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MIRKDPRSSL PPGFRFHPTD EELILHYLRK KVSSSPVPLS IIADVDIYKS DPWDLPAKAP  60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVPNREGFNE NIGIKKALVF  120
YTGKPPKGVK TNWIMHEYRL AESITPKRVT HARNGGQVNN LGDLNLKSKE YSMRLDDWVL  180
CRIYKKSHAS LSSAEVASAT SDDQEHEENG NEPFVVSEPL LPNDQTLKRQ KSSFSNLLDA  240
TDFTFLTNFL NETPENRTES DFSLMFGDFA NPDIYGNRYL DHKLPKLSSP TSETRVIGNK  300
RERLDYSEEM INTSKKMINN FSYNNSMDHL DHSMVQQSSF LNQEFLMSPP HLHYQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-71919016169NO APICAL MERISTEM PROTEIN
1ut4_B8e-71919016169NO APICAL MERISTEM PROTEIN
1ut7_A8e-71919016169NO APICAL MERISTEM PROTEIN
1ut7_B8e-71919016169NO APICAL MERISTEM PROTEIN
3swm_A8e-71919019172NAC domain-containing protein 19
3swm_B8e-71919019172NAC domain-containing protein 19
3swm_C8e-71919019172NAC domain-containing protein 19
3swm_D8e-71919019172NAC domain-containing protein 19
3swp_A8e-71919019172NAC domain-containing protein 19
3swp_B8e-71919019172NAC domain-containing protein 19
3swp_C8e-71919019172NAC domain-containing protein 19
3swp_D8e-71919019172NAC domain-containing protein 19
4dul_A8e-71919016169NAC domain-containing protein 19
4dul_B8e-71919016169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747600.0KF974760.1 Brassica napus NAC transcription factor 47-1 (NAC47-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434651.10.0PREDICTED: NAC domain-containing protein 2-like
SwissprotQ84TD60.0NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A0C4MXK50.0A0A0C4MXK5_BRANA; NAC47-1.1 protein
TrEMBLA0A398ATY50.0A0A398ATY5_BRACM; Uncharacterized protein
STRINGBra040152.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.10.0NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]