PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11353_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 385aa    MW: 43668.9 Da    PI: 6.3301
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11353_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1292.4e-0998140446
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                  +k  rr+++NReAAr+sR+RKka +++Lee   +L++  ++L+
  RrC11353_p1  98 DKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELA 140
                  7999**************************8888887776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.6E-888141No hitNo description
SMARTSM003385.2E-495153IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.34797139IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.94E-699141No hitNo description
PfamPF077161.5E-599144IPR004827Basic-leucine zipper domain
PROSITE patternPS000360102117IPR004827Basic-leucine zipper domain
PfamPF141443.9E-29186260IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEMMMSSSSS STTQVASLRE IGMYEPFQQL SGWENAFNTI GSSSNQNNNN PSSSTVPEVD  60
ARAEADDHNK ANYTSMYNNS VEAEPSSNND QDEDQVNDKM KRRLAQNREA ARKSRLRKKA  120
HVQQLEESRL KLSQLEQELA RARQQGLCVR NSSDTSYLGP AGTMNTGIAT FEMEYTHWLE  180
EQNKRVSEIR RALQAHISDI ELKMLVDTCL NHYANLFRMK ADAAKADVFF LISGMWRTST  240
ERFFQWIGGF RPSELLNVVM PYIEPLTDQQ LLEVRNLQQS SQQAEEALSQ GLDKLQQGLV  300
ENIAIDIRVV ESVSHGAQMA SAMENLQALE GFVNQADHLR KQTLQQMSKI LTTRQAARGL  360
LALGEYFHRL RALSSLWAAR PRERT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00157DAPTransfer from AT1G22070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1100980.0EU110098.1 Brassica juncea bZIP transcription factor (CdR15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467748.10.0PREDICTED: transcription factor TGA3
SwissprotQ392340.0TGA3_ARATH; Transcription factor TGA3
TrEMBLA0A0D3CCB10.0A0A0D3CCB1_BRAOL; Uncharacterized protein
STRINGBo5g035170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22070.10.0TGA1A-related gene 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  5. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]