PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11410_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 282aa    MW: 29456 Da    PI: 9.3252
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11410_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54e-076891225
                 -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                 k ++C  f+ t  C++Gd+C+F H
  RrC11410_p2 68 KSKPCTKFFSTSGCPFGDNCHFLH 91
                 7789******************** PP
2zf-CCCH33.29.1e-11248273127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+ C +fa+ G C +GdrC+FaHg+
  RrC11410_p2 248 FKTKMCERFAK-GNCTFGDRCHFAHGE 273
                  69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0686693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0846694IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-66793IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-86891IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-56891IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.41E-15137219IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.1E-15147218IPR004088K Homology domain, type 1
SMARTSM003221.1E-10147217IPR004087K Homology domain
PROSITE profilePS5008414.571148212IPR004088K Homology domain, type 1
PfamPF000131.5E-11150212IPR004088K Homology domain, type 1
CDDcd001051.42E-13150212No hitNo description
Gene3DG3DSA:4.10.1000.107.8E-16242277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8247277IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-7247273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765247274IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7248273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
RKNLICLDDN HHHHIRTQRV SNSDLYFLHG YSEDGLKLLV RSTPMAAAAE DSRSLSKMES  60
YSTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAV AQLTNMAPML PQASRNMQGS  120
GGGGGGGRFS GRGGGESGPG HVSSFGASAT AKISVDASLA GAIIGKGGVS SKQICRQTGA  180
KLSIQDHERD PNLKNIELEG TFEQINEASA MLIGRLNSAA SRRPPGAGGG GLGGGVGSEG  240
KPHPGSNFKT KMCERFAKGN CTFGDRCHFA HGEAELRRSG IA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407365.11e-130zinc finger CCCH domain-containing protein 36
SwissprotQ9C7C31e-123C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLE4MYD41e-128E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10
TrEMBLV4M8U61e-128V4M8U6_EUTSA; Uncharacterized protein
STRINGXP_006407365.11e-129(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-114C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]