PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11419_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family E2F/DP
Protein Properties Length: 225aa    MW: 26011 Da    PI: 7.4193
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11419_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.74.6e-2451133371
      E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  + +Lr+++ +   +++k e+ +i+t++eva+e++s+                 ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  RrC11419_p1  51 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikqnaekplneneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 133
                  6799999999...****9999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3646137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-2849133IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.89E-1952134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.6E-2052133IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011381.6E-12140225IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.54E-23140225No hitNo description
PfamPF087812.0E-21141225IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEMEMDLFVT PEKQRDRPSV SLRKTPVRRK LIVDDDDEIG SEKKGQSRTT GGGLRQFSVM  60
VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY NEKNIRRRVY DALNVFMALD  120
IIARDKKEIR WKGLPITCKK DVEEVKRDRN KVMNSVQKKA AFLKELREKV SSLESLMLRN  180
QEMVVKTEGP AEGFTLPLIL LETNPHAVVE IEISEDMQLV HLDFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-2650135890PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2945310.0AJ294531.1 Arabidopsis thaliana mRNA for DP-like protein (dpa gene).
GenBankAJ3190270.0AJ319027.1 Arabidopsis thaliana partial mRNA for E2F dimerisation partner protein (dp2a gene).
GenBankAK1171350.0AK117135.1 Arabidopsis thaliana At5g02470 mRNA for putative DP-2 transcription factor, complete cds, clone: RAFL16-67-D16.
GenBankBT0052860.0BT005286.1 Arabidopsis thaliana At5g02470 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423860.11e-155PREDICTED: transcription factor-like protein DPA
RefseqXP_010452086.11e-155PREDICTED: transcription factor-like protein DPA
RefseqXP_010452087.11e-155PREDICTED: transcription factor-like protein DPA
RefseqXP_010452088.11e-155PREDICTED: transcription factor-like protein DPA
RefseqXP_010452089.11e-155PREDICTED: transcription factor-like protein DPA
RefseqXP_019084579.11e-155PREDICTED: transcription factor-like protein DPA
RefseqXP_019084580.11e-155PREDICTED: transcription factor-like protein DPA
SwissprotQ9FNY31e-155DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A178ULD91e-153A0A178ULD9_ARATH; DPA
STRINGXP_010423860.11e-154(Camelina sativa)
STRINGXP_010452086.11e-154(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.31e-157Transcription factor DP