PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1144_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 249aa    MW: 27776.1 Da    PI: 7.8523
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1144_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.92.1e-3267855128
         NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  k+wyf+s+rd+kyatg r+nrat++gyWkatgkd+++l+ k++lvg++ktLvfy+grap+g+ktdWvmhe+rl
  RrC1144_p1   6 GKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRAILR-KSKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRL 78 
                 689************************************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.051104IPR003441NAC domain
SuperFamilySSF1019412.22E-383105IPR003441NAC domain
PfamPF023657.0E-15878IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
TACVGGKDWY FYSQRDRKYA TGLRTNRATA TGYWKATGKD RAILRKSKLV GMRKTLVFYQ  60
GRAPRGRKTD WVMHEFRLQG SFDPPTLNSP EVQEDWVLCR VFHKNTEGVL SRDNVGSCFD  120
ETASASLPPL MDSYINFDQE PSSYLGDDQH FITNEQVPCF SNLSKNQTLT NSVSELKKNP  180
IPLFTGGSAP TRLPGLDSFC SSDQMVLRAL LSQLTKIDGG IDVKESQSYG EGSSESFLTD  240
IGIPSTAWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-32210666167NO APICAL MERISTEM PROTEIN
1ut4_B3e-32210666167NO APICAL MERISTEM PROTEIN
1ut7_A3e-32210666167NO APICAL MERISTEM PROTEIN
1ut7_B3e-32210666167NO APICAL MERISTEM PROTEIN
3swm_A3e-32210669170NAC domain-containing protein 19
3swm_B3e-32210669170NAC domain-containing protein 19
3swm_C3e-32210669170NAC domain-containing protein 19
3swm_D3e-32210669170NAC domain-containing protein 19
3swp_A3e-32210669170NAC domain-containing protein 19
3swp_B3e-32210669170NAC domain-containing protein 19
3swp_C3e-32210669170NAC domain-containing protein 19
3swp_D3e-32210669170NAC domain-containing protein 19
4dul_A3e-32210666167NAC domain-containing protein 19
4dul_B3e-32210666167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667490.0KC966749.1 Brassica napus NAC transcription factor 22 (NAC22.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450146.10.0PREDICTED: NAC domain-containing protein 21/22
SwissprotQ84TE61e-155NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A3P6BS461e-167A0A3P6BS46_BRAOL; Uncharacterized protein
STRINGBo3g185760.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.11e-148NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]