PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11452_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 253aa    MW: 29097.5 Da    PI: 8.4554
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11452_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-083454526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                  C f+++ G+C+yG rC++ H+
  RrC11452_p2 34 VCTFYQK-GICSYGTRCRYEHV 54
                 5******.***********997 PP
2zf-CCCH20.77.3e-0780101426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  ++C+ fa+ G C++G++C+ +Hg
  RrC11452_p2  80 PICS-FAAAGDCPRGSQCPHMHG 101
                  7899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.784128IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7426IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-53053IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-43155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1693456IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.36176103IPR000571Zinc finger, CCCH-type
SMARTSM003560.003977102IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.18E-13133209No hitNo description
Gene3DG3DSA:3.30.40.101.6E-10136204IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00474144204No hitNo description
SMARTSM001848.7E-8145202IPR001841Zinc finger, RING-type
PfamPF000974.9E-8145202IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.386145203IPR001841Zinc finger, RING-type
PROSITE patternPS005180169178IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSDRILCKFF VHGSCLKGEN CEYSHDSKHH ANNVCTFYQK GICSYGTRCR YEHVRTSQHK  60
GDHGDNKPLN LCYTHPREHP ICSFAAAGDC PRGSQCPHMH GDICSTCGKK CLHPFRPEER  120
EEHTKECQKK QKHMEALKKS QDIECSVCLD RVLSKATPGE RKFGLLTECH HPFCIQCIRN  180
WRSSAPVSGM DVNSTLRACP ICRKLSYFVV PSVVWYSTPE EKKEIIDIYK AKLRYKLYLT  240
CLSSPFDMAW LSR
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485412.11e-175PREDICTED: E3 ubiquitin-protein ligase makorin
RefseqXP_018485413.11e-175PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS61e-145C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A078F3I51e-161A0A078F3I5_BRANA; BnaC03g35670D protein
TrEMBLA0A0D3BAA31e-161A0A0D3BAA3_BRAOL; Uncharacterized protein
STRINGBo3g061660.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-148C3H family protein