PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC11488_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BBR-BPC

Protein Properties

Length: 254aa MW: 28330.3 Da PI: 8.3566

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC11488_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	164.4	1.7e-50	52	254	15	242
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslq 112 e++++l +++++ms++aerda+++ern al++k++a+a+rd+a++qrd a++er++a++erdn+l+al+++en l+ l + + +s RrC11488_p1 52 EQHNALV--MNKKIMSILAERDAAVKERNEALAAKQEALAARDEALQQRDLAISERDNAIMERDNALTALQHRENHLNYIL-----ACAKRGGYQS-- 140 4557777..99***********************************************************999755433.....2222222221.. PP GAGA_bind 113 qlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPv 210 ++ + e++ + p+++ ++e++ ++k+kk +++++++ +k k+ +e+ +++ ++++ ++ ++++++ d++ln v++De+t+Pv RrC11488_p1 141 ----------CF-TDETHLPNPSPLSTIPHESSPTTKRKKDRKQETAR---SKGKRAGGEDLNRQLASPG--KKCRKDWDCNDVGLNLVTFDETTMPV 222 ..........12.23445555666677666666555555333333332...2333334567888999999..579******************* PP GAGA_bind 211 PvCsCtGalrqCYkWGnGGWqSaCCtttiSvy 242 P+C+CtG+ rqCYkWG GGWqS+CCttt+S+y RrC11488_p1 223 PMCTCTGTARQCYKWGHGGWQSSCCTTTLSQY 254 ****************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.0E-60	33	254	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.7E-48	50	254	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
GAIFFLLLLG LSLETISRDL SRLPLLLSPA KPELSSNCWC SGNMMPQHQI KEQHNALVMN 60 KKIMSILAER DAAVKERNEA LAAKQEALAA RDEALQQRDL AISERDNAIM ERDNALTALQ 120 HRENHLNYIL ACAKRGGYQS CFTDETHLPN PSPLSTIPHE SSPTTKRKKD RKQETARSKG 180 KRAGGEDLNR QLASPGKKCR KDWDCNDVGL NLVTFDETTM PVPMCTCTGT ARQCYKWGHG 240 GWQSSCCTTT LSQY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480223.1	1e-155	PREDICTED: protein BASIC PENTACYSTEINE5-like
Swissprot	F4JUI3	1e-108	BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBL	A0A0D3DIF6	1e-145	A0A0D3DIF6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F1T2	1e-145	A0A3P6F1T2_BRAOL; Uncharacterized protein
STRING	Bo7g119540.1	1e-145	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4090	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38910.2	3e-99	basic pentacysteine 5