PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11511_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 260aa    MW: 29446.3 Da    PI: 10.2759
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11511_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51e-20132181255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  g++GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+ +l+g
  RrC11511_p1 132 GFRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAAMRLRG 181
                  79*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-21132189IPR016177DNA-binding domain
PfamPF008471.1E-14132181IPR001471AP2/ERF domain
PROSITE profilePS5103222.405132189IPR001471AP2/ERF domain
SMARTSM003805.4E-31132195IPR001471AP2/ERF domain
CDDcd000183.20E-17133188No hitNo description
Gene3DG3DSA:3.30.730.103.2E-28133189IPR001471AP2/ERF domain
PRINTSPR003673.3E-10133144IPR001471AP2/ERF domain
PRINTSPR003673.3E-10155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MENTVDAKRL QLSFPLRSGV ETHQSLETYG LYKDTPLVCM PFSGSKPPFS NLTVTEPFNG  60
PDTFDISSLF SPDPKPVPAS QRRVMDDSIA AIVGENVLFG SNNIKVSEQH FTATETEDGV  120
KRWRKMPEKN GGFRGVRKRP WGRWSAEIRD RIGRCRHWLG TFDTAEEAAR AYDAAAMRLR  180
GTKAKTNFVV HPVFPVEIAE TQSSTTEEDR RRRKKKRMNV RKCVKVTSVE QLFSDTTRNL  240
TSSSNDGNVI CPFNNLKKWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-17124188671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210216RRRKKKR
2211216RRKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0188485e-72AC018848.6 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete sequence.
GenBankAC0188495e-72AC018849.2 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete sequence.
GenBankAY5608445e-72AY560844.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g80580) mRNA, complete cds.
GenBankBT0260385e-72BT026038.1 Arabidopsis thaliana At1g80580 mRNA, complete cds.
GenBankCP0026845e-72CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464465e-72DQ446446.1 Arabidopsis thaliana clone pENTR221-At1g80580 ethylene-responsive element-binding family protein (At1g80580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469814.10.0PREDICTED: ethylene-responsive transcription factor ERF084
SwissprotQ9M8M52e-78ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A078HPH51e-156A0A078HPH5_BRANA; BnaC02g22960D protein
STRINGBra008460.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-78ERF family protein