PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11525_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 291aa    MW: 33214.1 Da    PI: 7.735
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11525_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.26.6e-1138691546
                 HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
       SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkl 46
                  R +++lKKA EL vLCd +++v+ +  +g+l
  RrC11525_p1 38 AREKTMLKKALELTVLCDNKICVLHYDRDGNL 69
                 599************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0021775IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-112598IPR002100Transcription factor, MADS-box
PfamPF003195.6E-63969IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.253976IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVSLSLSSSA SDSSTKMKKK KLSVRNQTTR FKKPFLLARE KTMLKKALEL TVLCDNKICV  60
LHYDRDGNLV NTLPEDQSQV TNILDKYRNL SDGEKLKKST NLSQFYNKKL VDEKKRSLTD  120
AEERKRFTKK VGEFKGSLLD QFHILKDRVR DLRYSQDHHH QTQQDQSPFL DVTPQENHNF  180
PEASSYGFFP ANDFSSSLIE EENPLMMNFI PHDLDQQESF TNLLMSGDHV STITDQYLPS  240
PASSSTVCSS NHHQGKFSVF LFNHETGTFT QLPNSSSSSF DQGFTGTLTS Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487989.10.0PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLA0A3P6G4R61e-126A0A3P6G4R6_BRAOL; Uncharacterized protein
STRINGBo6g015480.11e-126(Brassica oleracea)
STRINGBo6g015500.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11759729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.12e-29AGAMOUS-like 89