PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11530_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 274aa    MW: 30532.8 Da    PI: 10.2237
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11530_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.73.4e-30130183155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  +prl+Wtp+LH+rFv+av +L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  RrC11530_p1 130 RPRLVWTPQLHKRFVDAVGHL-GIKNAVPKTIMQLMSVEGLTRENVASHLQKYRL 183
                  59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-19127187IPR009057Homeodomain-like
PROSITE profilePS512949.19127186IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-30129188IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-24131183IPR006447Myb domain, plants
PfamPF002497.9E-7133182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MFLTSSSSKI HLEPRSSAVT LSKRHRPKNT IPMREETPNW FVRWEEELPS PEELIPISQT  60
LITPHLALAF QIGSHNNHSS PKTTAAMYHQ KLQPPATPTM MNSDFGPVDS STDLGSGGGG  120
GDEPARTLKR PRLVWTPQLH KRFVDAVGHL GIKNAVPKTI MQLMSVEGLT RENVASHLQK  180
YRLYLRRMQG GNGNGVSGGH VMVSDSATDR LFASSPVPAH FLSPVRMNSE YLMMNPYLGK  240
HVVKQQNQVV RNLRYEEDSE YGNGDGGRKV LKLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-32130186157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438002.11e-153PREDICTED: transcription factor LUX
SwissprotO222101e-111MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A397Z7S21e-134A0A397Z7S2_BRACM; Uncharacterized protein
STRINGBra004593.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40970.11e-103G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]