PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11575_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 149aa    MW: 16775.5 Da    PI: 7.5018
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11575_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-055173123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C + F ++  L  H++ H
  RrC11575_p1 51 FSCNYCQRKFYSSQALGGHQNAH 73
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-64878No hitNo description
PROSITE profilePS5015711.0945178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDFQPNTSLR LSLPNYKNHP LNLELVLDPS SMSSSSSSST NSSCLEQPRV FSCNYCQRKF  60
YSSQALGGHQ NAHKLERTLA KKSRELFRSS TTVDVDQPYP SSGRFELYGR GYEGFVESGG  120
PRDYSGRRVP ESGIDQDQEM SHLDLSLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114821e-128AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2.
GenBankATHZFPB1e-128L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds.
GenBankCP0026881e-128CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627204.17e-91PREDICTED: zinc finger protein 2
RefseqXP_018475343.15e-91PREDICTED: zinc finger protein 2
RefseqXP_022554540.17e-91zinc finger protein 2-like
RefseqXP_022554547.17e-91zinc finger protein 2-like
SwissprotQ392613e-84ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A078FFX02e-89A0A078FFX0_BRANA; BnaC03g12900D protein
TrEMBLA0A0D3B2Z72e-89A0A0D3B2Z7_BRAOL; Uncharacterized protein
TrEMBLA0A397ZTX34e-89A0A397ZTX3_BRACM; Uncharacterized protein
TrEMBLA0A3P6A5502e-89A0A3P6A550_BRACM; Uncharacterized protein
TrEMBLA0A3P6AJV12e-89A0A3P6AJV1_BRAOL; Uncharacterized protein
TrEMBLM4CRH42e-89M4CRH4_BRARP; Uncharacterized protein
STRINGBra006815.1-P3e-90(Brassica rapa)
STRINGBo3g019270.13e-90(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.19e-85zinc finger protein 2