PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11581_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 205aa    MW: 23676.9 Da    PI: 8.695
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11581_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.4e-1188146461
                  XCHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerr.kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                  ++r+++ k +NRe+ArrsR +K+++++ L+    +L +eN++L ++l      ++   +
  RrC11581_p1  88 DERQKKqKKSNRESARRSRMKKQKYLDDLRSQLNQLNTENRQLGNQLRYVMHYCQHANM 146
                  4455442889*********************************9988877777776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.9E-985136No hitNo description
SMARTSM003383.0E-1186150IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.09488134IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.83E-1090140No hitNo description
PfamPF001708.0E-890144IPR004827Basic-leucine zipper domain
CDDcd147024.41E-1591142No hitNo description
PROSITE patternPS00036093108IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSSILPGFLS EPEVANHVQT LETRFTPWDD GASDLFSIFE SPVCPVEVNP AVEKTNSCQI  60
LNKSPSCPDM DDKPSNLTGL NVCFPKRDER QKKQKKSNRE SARRSRMKKQ KYLDDLRSQL  120
NQLNTENRQL GNQLRYVMHY CQHANMENDR LRLEHKILHE KLLNLRQALV LRQIQQSSTC  180
ATWSCVNSTV VTVHQNTSML RDHVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193108QKKSNRESARRSRMKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619717.11e-117PREDICTED: regulatory protein opaque-2-like
TrEMBLA0A078HJJ01e-127A0A078HJJ0_BRANA; BnaAnng05020D protein
TrEMBLA0A398AJZ81e-127A0A398AJZ8_BRACM; Uncharacterized protein
STRINGBo2g168170.11e-116(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.13e-44basic leucine-zipper 5