PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11712_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 512aa    MW: 57016.5 Da    PI: 7.9839
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11712_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.4e-08232252526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd+C +aHg
  RrC11712_p1 232 PCPEFRK-GSCPKGDSCEYAHG 252
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.09E-1333155IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.4E-1533181IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001977107IPR002110Ankyrin repeat
PROSITE profilePS5029711.53277186IPR020683Ankyrin repeat-containing domain
PfamPF136371.1E-778130No hitNo description
CDDcd002046.07E-1279176No hitNo description
SMARTSM00248260112145IPR002110Ankyrin repeat
PROSITE profilePS5010313.976227254IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5227253IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5232252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-6232253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4259291IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.681262286IPR000571Zinc finger, CCCH-type
SMARTSM0035628262285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MCGSESNLCS SRPLTEAEYM RRKSEEGVAA AATCLLELAA CDDLPSFRRE IEENSIDINE  60
PGFWYCRRVG SKKMGFQERT PLMVAAMYGS IDVLSYIIST GNADVDRVSG DEKVTALHCA  120
VSACSVSIVR VIKILLDAAS ASPNCVDANG NKPVDLMVRA SRFIPNQTRK AVELLLTGSS  180
VSLMEEEEEE EVKSVKPCSR AYSHDWTECP FVHPGENARR RDPRKYPYTC VPCPEFRKGS  240
CPKGDSCEYA HGVFESWLHP GQYKTRLCKD ETGCARRVCF FAHRRDELRP VNASTGSAMV  300
SPQSPEMSVM SSPMGNNGVP LSPRNGGLWQ NRVNSLTPPP LQLNGSRLKS SLSARDMDIE  360
MELRLRDSYD MQLQSPSRSH YTSSPVRQPP PHGFESSAAM AAAVMKTRST AFARRSLSFK  420
PAPVANSNVV SEWGSPNGKL EWGMQREELN KMRRSASFSI HGKNKSRPVR DYSDEPDVSW  480
VNSLMKESAP ERAFVLNERV WNTFKLPSWA EQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459968.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
RefseqXP_018459969.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLV4M8Q70.0V4M8Q7_EUTSA; Uncharacterized protein
STRINGXP_006411266.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein