PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11742_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 250aa    MW: 28553.6 Da    PI: 10.1973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11742_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-1091137455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  RrC11742_p1  91 EHVIAERKRREKLSEKFIALSALLPGL-----KKADKITVLDDAIARLKQLQ 137
                  699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1586153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.24687136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-891137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-1591152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.39E-992141No hitNo description
SMARTSM003533.1E-1293142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKKLMYRLLK RAYIHKELSL FDHQVPLNYL KEKPKPFVKI NNKPQLISFD LSSNVSSSPA  60
REDIIMDQLV RCGTKRKSCS SAKRSPAFAK EHVIAERKRR EKLSEKFIAL SALLPGLKKA  120
DKITVLDDAI ARLKQLQEQI RKLKEEKEAT RHMESMILVK KSKVFFDEKT SLPSSSCSDN  180
EQFDQPLPQI EAKVAQNEVL IRIHCEKNKG SMIDILKTIE NLQLCVENSI VLPFGDSILA  240
ITVLAKVIIQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195100ERKRRE
296101RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437719.11e-158PREDICTED: transcription factor bHLH19-like
SwissprotQ1PF161e-111BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A397Y4951e-137A0A397Y495_BRACM; Uncharacterized protein
STRINGBra039926.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-114bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]