PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11810_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 222aa    MW: 24832.9 Da    PI: 10.2678
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11810_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08156204247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+ E++++  +vk+ +       Wk  ++ ++ +R++k+++s+++++
      RrC11810_p1 156 KSWTAKEEQKFRSLVKKNPLSnrdgFWKYASKAFP-RRSEKDVISYYYNV 204
                      58****************98899************.************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.4E-7154212IPR009057Homeodomain-like
SMARTSM007171.1E-4154207IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-6156204IPR009057Homeodomain-like
PfamPF002496.3E-7156204IPR001005SANT/Myb domain
PROSITE profilePS500906.226157205IPR017877Myb-like domain
CDDcd001671.70E-6157205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MRLGGSDCYI SISCQSKRTL EQPRSSGTVS TAPPERSLGN TSDSSFDKKR QKVVPSSHPR  60
SSSRQTVAAA ASNRPNRKDV GVKIPGSNKT KPVIPVGPGF QAEIPVWIAP TKKGKFYGST  120
DCVKLHIKEA RELLEKETGG AFYTWKFDEM GEVGSKSWTA KEEQKFRSLV KKNPLSNRDG  180
FWKYASKAFP RRSEKDVISY YYNVFLNHRN TDDDHYGDFL AG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476289.11e-132PREDICTED: uncharacterized protein LOC108847527
RefseqXP_018476290.11e-132PREDICTED: uncharacterized protein LOC108847527
TrEMBLA0A3P6AJ001e-104A0A3P6AJ00_BRAOL; DNA topoisomerase 2
TrEMBLM4CNK61e-104M4CNK6_BRARP; DNA topoisomerase 2
STRINGBra005794.1-P1e-105(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1163945