PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11828_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 200aa    MW: 22881.4 Da    PI: 9.7546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11828_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-121445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WT+eEde+lv++vk++G  +W++ ++  g
      RrC11828_p1 14 KGPWTPEEDEKLVKYVKKHGHSSWRALPKLAG 45
                     79**************************9998 PP
2Myb_DNA-binding29.12.3e-0970942348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W+tIa+ ++ gRt++++k++w+++l
      RrC11828_p1 70 RWSTIANNLP-GRTDNEIKNFWNTHL 94
                     6*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.982998IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-131245IPR009057Homeodomain-like
SMARTSM007178.4E-181396IPR001005SANT/Myb domain
PfamPF002494.3E-101446IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-141495IPR009057Homeodomain-like
CDDcd001678.74E-141694No hitNo description
Gene3DG3DSA:1.10.10.608.3E-136999IPR009057Homeodomain-like
PfamPF002496.7E-77094IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGRSPSGDDS GLKKGPWTPE EDEKLVKYVK KHGHSSWRAL PKLAGTTLYL VLIVNGFVFL  60
YCLLDDDVIR WSTIANNLPG RTDNEIKNFW NTHLKKKLIQ MGVDPMTHRP RTDVLSGLSQ  120
LISLSSDLRG FVDLQQQFPV NQEQTILKLQ TEMAKLQLFQ YLFQPPSMYN NINPKSISNG  180
ETTIGVLRLY FNNFFSFLKS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553421e-108AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444283.17e-96PREDICTED: transcription factor MYB39-like
SwissprotQ9SBF31e-88MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A178UPI63e-86A0A178UPI6_ARATH; MYB92
STRINGAT5G10280.16e-87(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.12e-81myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]