PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1183_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 317aa    MW: 36550 Da    PI: 9.3525
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1183_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.61.2e-161252545
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                n+  r  ++ kRr g++KK +ELS+LCd+++++i+fs++  
  RrC1183_p2 12 NENSRALSLKKRRSGLMKKVKELSILCDVKACLIMFSPKEA 52
                788899*******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002668.03E-26183No hitNo description
SMARTSM004325.0E-21159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.147150IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-9222IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-19392IPR002100Transcription factor, MADS-box
PfamPF003191.2E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-92237IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-93758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTKKIKLALM ANENSRALSL KKRRSGLMKK VKELSILCDV KACLIMFSPK EAVPVVWPSA  60
EAARNLLKDL DALPDFLKKK NEMTLESYLK EKTWKVHENL RKTQKGNMEC KTDQLMVQLN  120
CFRSRKLDDL DVKEIYSLIS FSKDGIMHLR KKVGSVQHCP LRDPPVYLFG EQVKEFRTTT  180
GGGQENERAR KTFEEVNMAS IGASEEKQSY YLMDEWTFPS LKPPSPRTHQ QIMMNMASYS  240
NNLDPRCYQS YHPYQGSSSN GDYSLEMEPA FPPMLAFPDY VGPVSHPYPF DFMSHKERSN  300
IDKNNNANNG FVQRHQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0116220.0AP011622.1 Brassica rapa subsp. pekinensis DNA, chromosome: Linkage group A5, BAC clone: KBrB038I07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491092.10.0PREDICTED: floral homeotic protein PMADS 2-like
TrEMBLA0A0D3CL250.0A0A0D3CL25_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F4160.0A0A3P6F416_BRAOL; Uncharacterized protein
STRINGBo5g135120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.13e-74AGAMOUS-like 48