PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11855_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 170aa    MW: 18735.8 Da    PI: 4.9162
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11855_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.17.8e-132887463
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                 +++ +r+ +NRe+ArrsR RK++ ++ L+  + +L++ N++    l   ++++ k ++e+
  RrC11855_p1 28 DRKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILTSLTVTTQLYMKIQAEN 87
                 7899***********************************999888887777777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.5E-172589IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.7E-102671No hitNo description
PROSITE profilePS5021710.0482790IPR004827Basic-leucine zipper domain
PfamPF001707.3E-102882IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-122981No hitNo description
CDDcd147025.89E-223081No hitNo description
PROSITE patternPS0003603247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MASSSSTYRS SSSSDGGNPS GPVVAVDDRK RKRMLSNRES ARRSRMRKQK HVDDLTAQIN  60
QLSNDNRQIL TSLTVTTQLY MKIQAENSIL TAQMSELSTR LESLNEIVDL VTTTNNGGGV  120
DQIDGCGFDD RTVGINCDGY YDDMMSGVNP WGGSVFSNQP IMANDMMNMY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12849RKRKRMLSNRESARRSRMRKQK
24148RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250|UniProtKB:O65683, ECO:0000269|PubMed:29348240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325500.0AC232550.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011J16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461920.11e-112PREDICTED: bZIP transcription factor 2-like
SwissprotQ9SI154e-88BZIP2_ARATH; bZIP transcription factor 2
TrEMBLA0A3P6DCM21e-112A0A3P6DCM2_BRAOL; Uncharacterized protein
STRINGBo9g026190.11e-106(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18160.12e-89basic leucine-zipper 2
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]