PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC11964_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YB

Protein Properties

Length: 195aa MW: 22618.8 Da PI: 7.8774

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC11964_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	64.1	2.9e-20	152	195	50	93
NF-YB 50 asdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 asdkcq+ek kt+ng+dllwa++tl fe+y+eplk+yl++yre+ RrC11964_p1 152 ASDKCQKEKWKTVNGEDLLWAMSTLDFENYLEPLKLYLARYREV 195 9*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	6.98E-13	150	194	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.2E-17	151	194	IPR009072	Histone-fold
PRINTS	PR00615	2.3E-9	156	174	No hit	No description
PRINTS	PR00615	2.3E-9	175	193	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MAINQLHFSD LKDGFCKNRF CDSGKNLKKF GEPLEERPRN EEKIDAIALP RMPEYEVNQR 60 TREERRDREL GEAEHAMETF CKHMSLFPCW LMTARDADVR SIPSTMADLG RNKKMEKQTL 120 NTIHATKSLM SQFQSRNASL SSSASLPGSM LASDKCQKEK WKTVNGEDLL WAMSTLDFEN 180 YLEPLKLYLA RYREV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	9e-15	152	194	50	92	Transcription factor HapC (Eurofung)
4g92_B	9e-15	152	194	50	92	Transcription factor HapC (Eurofung)

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM37377	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.6	4e-21	nuclear factor Y, subunit B1